HL_8U5Z_001

3D structure

PDB id

8U5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mango II variant aptamer bound to T01-7M-B

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAGGUGAGGAGAGGCGAGGAAGAG

Length

26 nucleotides

Bulged bases (A, C, G, U)

17A, 19A, 22C, 27A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12758.2

Basepair signature

cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH

Number of instances in this motif group

3

Unit IDs

8U5Z|1|A|C|6
8U5Z|1|A|G|7
8U5Z|1|A|A|8
8U5Z|1|A|A|9
8U5Z|1|A|G|10
8U5Z|1|A|G|11
8U5Z|1|A|U|12
8U5Z|1|A|G|13
8U5Z|1|A|A|14
8U5Z|1|A|G|15
8U5Z|1|A|G|16
8U5Z|1|A|A|17
8U5Z|1|A|G|18
8U5Z|1|A|A|19
8U5Z|1|A|G|20
8U5Z|1|A|G|21
8U5Z|1|A|C|22
8U5Z|1|A|G|23
8U5Z|1|A|A|24
8U5Z|1|A|G|25
8U5Z|1|A|G|26
8U5Z|1|A|A|27
8U5Z|1|A|A|28
8U5Z|1|A|G|29
8U5Z|1|A|A|30
8U5Z|1|A|G|31

Current chains

Chain A

Mango II variant

Nearby chains

Chain B

Mango II variant

Chain C

Mango II variant