HL_8UBD_002

3D structure

PDB id

8UBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8UBD|1|I|U|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UBD_002 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.1199

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8UBD|1|I|C|72
8UBD|1|I|U|73
8UBD|1|I|U|74
8UBD|1|I|C|75
8UBD|1|I|G|76
8UBD|1|I|G|77

Current chains

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain A

Reverse transcriptase