HL_8UD6_028

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8UD6|1|1A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_028 not in the Motif Atlas

Geometric match to HL_5J7L_161

Geometric discrepancy: 0.357

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UD6|1|1A|C|1064
8UD6|1|1A|U|1065
8UD6|1|1A|U|1066
8UD6|1|1A|A|1067
8UD6|1|1A|G|1068
8UD6|1|1A|A|1069
8UD6|1|1A|A|1070
8UD6|1|1A|G|1071
8UD6|1|1A|C|1072
8UD6|1|1A|A|1073
8UD6|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains