3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GUUAAUAUUC
Length
10 nucleotides
Bulged bases
8UD6|1|1A|U|1396, 8UD6|1|1A|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UD6_035 not in the Motif Atlas
Homologous match to HL_7RQB_036
Geometric discrepancy: 0.0477
The information below is about HL_7RQB_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69023.2
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8UD6|1|1A|G|1389
8UD6|1|1A|U|1390
8UD6|1|1A|U|1391
8UD6|1|1A|A|1392
8UD6|1|1A|A|1393
8UD6|1|1A|U|1394
8UD6|1|1A|A|1395
8UD6|1|1A|U|1396
8UD6|1|1A|U|1397
8UD6|1|1A|C|1398

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1X
50S ribosomal protein L23

Coloring options:


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