HL_8UD6_035

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8UD6|1|1A|U|1396, 8UD6|1|1A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0477

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UD6|1|1A|G|1389
8UD6|1|1A|U|1390
8UD6|1|1A|U|1391
8UD6|1|1A|A|1392
8UD6|1|1A|A|1393
8UD6|1|1A|U|1394
8UD6|1|1A|A|1395
8UD6|1|1A|U|1396
8UD6|1|1A|U|1397
8UD6|1|1A|C|1398

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23