3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GAAGACCAC
Length
9 nucleotides
Bulged bases
8UD6|1|1A|A|2820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UD6_067 not in the Motif Atlas
Homologous match to HL_7RQB_068
Geometric discrepancy: 0.0439
The information below is about HL_7RQB_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.1
Basepair signature
cWW-cSW-F-F-F-F
Number of instances in this motif group
9

Unit IDs

8UD6|1|1A|G|2819
8UD6|1|1A|A|2820
8UD6|1|1A|A|2821
8UD6|1|1A|G|2822
8UD6|1|1A|A|2823
8UD6|1|1A|C|2824
8UD6|1|1A|C|2825
8UD6|1|1A|A|2826
8UD6|1|1A|C|2827

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1E
50S ribosomal protein L3
Chain 1R
50S ribosomal protein L17
Chain 1T
50S ribosomal protein L19

Coloring options:


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