3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CGCG
Length
4 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UD6_133 not in the Motif Atlas
Geometric match to HL_1KH6_003
Geometric discrepancy: 0.3111
The information below is about HL_1KH6_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_27483.1
Basepair signature
cWW-F
Number of instances in this motif group
2

Unit IDs

8UD6|1|2A|C|652|||D
8UD6|1|2A|G|652|||E
8UD6|1|2A|C|652|||T
8UD6|1|2A|G|652|||U

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1957 s