HL_8UD6_175

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_175 not in the Motif Atlas

Geometric match to HL_5B2P_001

Geometric discrepancy: 0.0952

The information below is about HL_5B2P_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8UD6|1|2A|C|2658
8UD6|1|2A|G|2659
8UD6|1|2A|A|2660
8UD6|1|2A|G|2661
8UD6|1|2A|A|2662
8UD6|1|2A|G|2663

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6