HL_8UD6_178

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAGC

Length

5 nucleotides

Bulged bases

8UD6|1|2A|A|2801|||A

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_178 not in the Motif Atlas

Homologous match to HL_7A0S_066

Geometric discrepancy: 0.4371

The information below is about HL_7A0S_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD6|1|2A|G|2793
8UD6|1|2A|C|2794
8UD6|1|2A|A|2801|||A
8UD6|1|2A|G|2802
8UD6|1|2A|C|2803

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains