3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CUUUG
Length
5 nucleotides
Bulged bases
8UD6|1|2a|U|202, 8UD6|1|2a|U|204
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UD6_187 not in the Motif Atlas
Homologous match to HL_4LFB_005
Geometric discrepancy: 0.4375
The information below is about HL_4LFB_005
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_48778.1
Basepair signature
cWW-F
Number of instances in this motif group
51

Unit IDs

8UD6|1|2a|C|201
8UD6|1|2a|U|202
8UD6|1|2a|U|203
8UD6|1|2a|U|204
8UD6|1|2a|G|216

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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