3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GUUCGGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UD6_208 not in the Motif Atlas
Homologous match to HL_4LFB_026
Geometric discrepancy: 0.3719
The information below is about HL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87954.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
7

Unit IDs

8UD6|1|2a|G|1134
8UD6|1|2a|U|1135
8UD6|1|2a|U|1136
8UD6|1|2a|C|1137
8UD6|1|2a|G|1138
8UD6|1|2a|G|1139
8UD6|1|2a|C|1140

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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