HL_8UD7_180

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

8UD7|1|2A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD7_180 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.0987

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UD7|1|2A|G|2819
8UD7|1|2A|A|2820
8UD7|1|2A|A|2821
8UD7|1|2A|G|2822
8UD7|1|2A|A|2823
8UD7|1|2A|C|2824
8UD7|1|2A|C|2825
8UD7|1|2A|A|2826
8UD7|1|2A|C|2827

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19