HL_8UD7_180
3D structure
- PDB id
- 8UD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GAAGACCAC
- Length
- 9 nucleotides
- Bulged bases
- 8UD7|1|2A|A|2820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UD7_180 not in the Motif Atlas
- Homologous match to HL_4WF9_064
- Geometric discrepancy: 0.0987
- The information below is about HL_4WF9_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.6
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8UD7|1|2A|G|2819
8UD7|1|2A|A|2820
8UD7|1|2A|A|2821
8UD7|1|2A|G|2822
8UD7|1|2A|A|2823
8UD7|1|2A|C|2824
8UD7|1|2A|C|2825
8UD7|1|2A|A|2826
8UD7|1|2A|C|2827
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2E
- 50S ribosomal protein L3
- Chain 2R
- 50S ribosomal protein L17
- Chain 2T
- 50S ribosomal protein L19
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