HL_8UD8_208

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

8UD8|1|2a|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD8_208 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2591

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD8|1|2a|G|1134
8UD8|1|2a|U|1135
8UD8|1|2a|U|1136
8UD8|1|2a|C|1137
8UD8|1|2a|G|1138
8UD8|1|2a|G|1139
8UD8|1|2a|C|1140

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains