HL_8UD8_214

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGG(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

8UD8|1|2a|G|1517

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD8_214 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.098

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8UD8|1|2a|C|1515
8UD8|1|2a|G|1516
8UD8|1|2a|G|1517
8UD8|1|2a|MA6|1518
8UD8|1|2a|MA6|1519
8UD8|1|2a|G|1520

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA