HL_8UIK_014

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

8UIK|1|L5|C|1172, 8UIK|1|L5|G|1178, 8UIK|1|L5|U|1179, 8UIK|1|L5|C|1181, 8UIK|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|L5|G|1170
8UIK|1|L5|G|1171
8UIK|1|L5|C|1172
8UIK|1|L5|G|1173
8UIK|1|L5|G|1174
8UIK|1|L5|A|1175
8UIK|1|L5|C|1176
8UIK|1|L5|U|1177
8UIK|1|L5|G|1178
8UIK|1|L5|U|1179
8UIK|1|L5|C|1180
8UIK|1|L5|C|1181
8UIK|1|L5|C|1182
8UIK|1|L5|C|1183
8UIK|1|L5|A|1184
8UIK|1|L5|G|1185
8UIK|1|L5|U|1186
8UIK|1|L5|G|1187
8UIK|1|L5|C|1188
8UIK|1|L5|G|1189
8UIK|1|L5|C|1190
8UIK|1|L5|C|1191

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like