HL_8UIK_016

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8UIK|1|L5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_016 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.0758

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8UIK|1|L5|U|1317
8UIK|1|L5|C|1318
8UIK|1|L5|U|1319
8UIK|1|L5|U|1320
8UIK|1|L5|G|1321
8UIK|1|L5|A|1322
8UIK|1|L5|A|1323
8UIK|1|L5|A|1324
8UIK|1|L5|C|1325
8UIK|1|L5|A|1326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32