HL_8UIK_028

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8UIK|1|L5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_028 not in the Motif Atlas

Homologous match to HL_8P9A_137

Geometric discrepancy: 0.0709

The information below is about HL_8P9A_137

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8UIK|1|L5|G|1864
8UIK|1|L5|G|1865
8UIK|1|L5|U|1866
8UIK|1|L5|A|1867
8UIK|1|L5|A|1868
8UIK|1|L5|G|1869
8UIK|1|L5|C|1870

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like