HL_8UIK_043

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

8UIK|1|L5|U|2707, 8UIK|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|L5|C|2704
8UIK|1|L5|G|2705
8UIK|1|L5|G|2706
8UIK|1|L5|U|2707
8UIK|1|L5|U|2708
8UIK|1|L5|C|2709
8UIK|1|L5|C|2710
8UIK|1|L5|G|2711
8UIK|1|L5|G|2712

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CA

Proliferation-associated protein 2G4

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15

Chain LX

60S ribosomal protein L23a