HL_8UIK_057

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8UIK|1|L5|A|3876, 8UIK|1|L5|A|3877, 8UIK|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_057 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.0956

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8UIK|1|L5|G|3873
8UIK|1|L5|G|3874
8UIK|1|L5|G|3875
8UIK|1|L5|A|3876
8UIK|1|L5|A|3877
8UIK|1|L5|C|3878
8UIK|1|L5|G|3879
8UIK|1|L5|G|3880
8UIK|1|L5|G|3881
8UIK|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

60S ribosomal protein L32