HL_8UIK_059

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

8UIK|1|L5|G|4104, 8UIK|1|L5|G|4106

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|L5|A|4098
8UIK|1|L5|G|4099
8UIK|1|L5|C|4100
8UIK|1|L5|C|4101
8UIK|1|L5|C|4102
8UIK|1|L5|C|4103
8UIK|1|L5|G|4104
8UIK|1|L5|A|4105
8UIK|1|L5|G|4106
8UIK|1|L5|G|4107
8UIK|1|L5|G|4108
8UIK|1|L5|G|4109
8UIK|1|L5|C|4110
8UIK|1|L5|U|4111

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34