HL_8UIK_060

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCGCGCGCCGG

Length

11 nucleotides

Bulged bases

8UIK|1|L5|G|4141, 8UIK|1|L5|C|4142, 8UIK|1|L5|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|L5|C|4137
8UIK|1|L5|C|4138
8UIK|1|L5|G|4139
8UIK|1|L5|C|4140
8UIK|1|L5|G|4141
8UIK|1|L5|C|4142
8UIK|1|L5|G|4143
8UIK|1|L5|C|4144
8UIK|1|L5|C|4145
8UIK|1|L5|G|4146
8UIK|1|L5|G|4147

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LZ

60S ribosomal protein L27