HL_8UIK_064

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_064 not in the Motif Atlas

Homologous match to HL_8CRE_056

Geometric discrepancy: 0.098

The information below is about HL_8CRE_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8UIK|1|L5|C|4270
8UIK|1|L5|A|4271
8UIK|1|L5|G|4272
8UIK|1|L5|A|4273
8UIK|1|L5|A|4274
8UIK|1|L5|G|4275
8UIK|1|L5|G|4276
8UIK|1|L5|G|4277

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a