HL_8UIK_076

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

8UIK|1|L5|G|4910, 8UIK|1|L5|A|4911, 8UIK|1|L5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_076 not in the Motif Atlas

Geometric match to HL_8CRE_068

Geometric discrepancy: 0.1587

The information below is about HL_8CRE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8UIK|1|L5|G|4907
8UIK|1|L5|G|4908
8UIK|1|L5|A|4909
8UIK|1|L5|G|4910
8UIK|1|L5|A|4911
8UIK|1|L5|G|4912
8UIK|1|L5|G|4913
8UIK|1|L5|C|4914

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a