HL_8UIK_078

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8UIK|1|L5|C|5023, 8UIK|1|L5|C|5024, 8UIK|1|L5|C|5025, 8UIK|1|L5|U|5026, 8UIK|1|L5|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_078 not in the Motif Atlas

Geometric match to HL_8CRE_052

Geometric discrepancy: 0.3642

The information below is about HL_8CRE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8UIK|1|L5|C|5021
8UIK|1|L5|U|5022
8UIK|1|L5|C|5023
8UIK|1|L5|C|5024
8UIK|1|L5|C|5025
8UIK|1|L5|U|5026
8UIK|1|L5|C|5027
8UIK|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8