HL_8UIK_093

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_093 not in the Motif Atlas

Homologous match to HL_8CRE_199

Geometric discrepancy: 0.2453

The information below is about HL_8CRE_199

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8UIK|1|S2|U|416
8UIK|1|S2|C|417
8UIK|1|S2|A|418
8UIK|1|S2|G|419
8UIK|1|S2|G|420
8UIK|1|S2|G|421

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9

Chain SL

40S ribosomal protein S11

Chain SW

40S ribosomal protein S15a