HL_8UIK_094
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8UIK|1|S2|A|448, 8UIK|1|S2|C|450, 8UIK|1|S2|G|451
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UIK_094 not in the Motif Atlas
- Homologous match to HL_8CRE_200
- Geometric discrepancy: 0.143
- The information below is about HL_8CRE_200
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UIK|1|S2|C|441
8UIK|1|S2|C|442
8UIK|1|S2|U|443
8UIK|1|S2|G|444
8UIK|1|S2|A|445
8UIK|1|S2|G|446
8UIK|1|S2|A|447
8UIK|1|S2|A|448
8UIK|1|S2|A|449
8UIK|1|S2|C|450
8UIK|1|S2|G|451
8UIK|1|S2|G|452
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SY
- 40S ribosomal protein S24
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