HL_8UIK_103

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8UIK|1|S2|G|891, 8UIK|1|S2|U|899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIK|1|S2|U|885
8UIK|1|S2|A|886
8UIK|1|S2|U|887
8UIK|1|S2|U|888
8UIK|1|S2|U|889
8UIK|1|S2|U|890
8UIK|1|S2|G|891
8UIK|1|S2|U|892
8UIK|1|S2|U|893
8UIK|1|S2|G|894
8UIK|1|S2|G|895
8UIK|1|S2|U|896
8UIK|1|S2|U|897
8UIK|1|S2|U|898
8UIK|1|S2|U|899
8UIK|1|S2|C|900
8UIK|1|S2|G|901

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11