HL_8UIK_119
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGUCGGCCCACGGC
- Length
- 14 nucleotides
- Bulged bases
- 8UIK|1|S2|G|1760, 8UIK|1|S2|C|1762, 8UIK|1|S2|G|1763, 8UIK|1|S2|G|1764, 8UIK|1|S2|C|1765, 8UIK|1|S2|C|1766, 8UIK|1|S2|C|1767, 8UIK|1|S2|A|1768, 8UIK|1|S2|C|1769, 8UIK|1|S2|G|1770, 8UIK|1|S2|G|1771
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UIK|1|S2|G|1759
8UIK|1|S2|G|1760
8UIK|1|S2|U|1761
8UIK|1|S2|C|1762
8UIK|1|S2|G|1763
8UIK|1|S2|G|1764
8UIK|1|S2|C|1765
8UIK|1|S2|C|1766
8UIK|1|S2|C|1767
8UIK|1|S2|A|1768
8UIK|1|S2|C|1769
8UIK|1|S2|G|1770
8UIK|1|S2|G|1771
8UIK|1|S2|C|1772
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LW
- Ribosomal protein L24
Coloring options: