HL_8UIY_012

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGACUGUCCCCAGUGC

Length

16 nucleotides

Bulged bases

8UIY|1|L5|G|1178, 8UIY|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIY|1|L5|G|1173
8UIY|1|L5|G|1174
8UIY|1|L5|A|1175
8UIY|1|L5|C|1176
8UIY|1|L5|U|1177
8UIY|1|L5|G|1178
8UIY|1|L5|U|1179
8UIY|1|L5|C|1180
8UIY|1|L5|C|1181
8UIY|1|L5|C|1182
8UIY|1|L5|C|1183
8UIY|1|L5|A|1184
8UIY|1|L5|G|1185
8UIY|1|L5|U|1186
8UIY|1|L5|G|1187
8UIY|1|L5|C|1188

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like