3D structure

PDB id
8UIY (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.44 Å

Loop

Sequence
CCUCUCCAGUCCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UIY|1|L5|C|1436
8UIY|1|L5|C|1437
8UIY|1|L5|U|1438
8UIY|1|L5|C|1439
8UIY|1|L5|U|1440
8UIY|1|L5|C|1441
8UIY|1|L5|C|1442
8UIY|1|L5|A|1443
8UIY|1|L5|G|1444
8UIY|1|L5|U|1445
8UIY|1|L5|C|1446
8UIY|1|L5|C|1447
8UIY|1|L5|G|1448

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LF
60S ribosomal protein L7
Chain LQ
60S ribosomal protein L18
Chain Lb
Large ribosomal subunit protein eL29

Coloring options:

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