HL_8UIY_040

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

8UIY|1|L5|U|2707, 8UIY|1|L5|U|2708, 8UIY|1|L5|C|2709, 8UIY|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIY|1|L5|C|2704
8UIY|1|L5|G|2705
8UIY|1|L5|G|2706
8UIY|1|L5|U|2707
8UIY|1|L5|U|2708
8UIY|1|L5|C|2709
8UIY|1|L5|C|2710
8UIY|1|L5|G|2711
8UIY|1|L5|G|2712

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15

Chain LX

60S ribosomal protein L23a