HL_8UIY_057

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIY_057 not in the Motif Atlas

Homologous match to HL_8CRE_056

Geometric discrepancy: 0.0934

The information below is about HL_8CRE_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8UIY|1|L5|C|4270
8UIY|1|L5|A|4271
8UIY|1|L5|G|4272
8UIY|1|L5|A|4273
8UIY|1|L5|A|4274
8UIY|1|L5|G|4275
8UIY|1|L5|G|4276
8UIY|1|L5|G|4277

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Pt

Transfer RNA; tRNA