HL_8UIY_071

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

AUCUCGUCUGAUCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIY_071 not in the Motif Atlas

Geometric match to HL_4V9F_074

Geometric discrepancy: 0.1422

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8UIY|1|L7|A|32
8UIY|1|L7|U|33
8UIY|1|L7|C|34
8UIY|1|L7|U|35
8UIY|1|L7|C|36
8UIY|1|L7|G|37
8UIY|1|L7|U|38
8UIY|1|L7|C|39
8UIY|1|L7|U|40
8UIY|1|L7|G|41
8UIY|1|L7|A|42
8UIY|1|L7|U|43
8UIY|1|L7|C|44
8UIY|1|L7|U|45

Current chains

Chain L7

5S rRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LJ

60S ribosomal protein L11