HL_8UIY_078

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GUAGAAGGUAUC

Length

12 nucleotides

Bulged bases

8UIY|1|Pt|A|17, 8UIY|1|Pt|G|18, 8UIY|1|Pt|G|19, 8UIY|1|Pt|U|20|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIY_078 not in the Motif Atlas

Homologous match to HL_4JYZ_001

Geometric discrepancy: 0.3957

The information below is about HL_4JYZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.4

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

8UIY|1|Pt|G|12
8UIY|1|Pt|U|13
8UIY|1|Pt|A|14
8UIY|1|Pt|G|15
8UIY|1|Pt|A|16
8UIY|1|Pt|A|17
8UIY|1|Pt|G|18
8UIY|1|Pt|G|19
8UIY|1|Pt|U|20|||A
8UIY|1|Pt|A|21
8UIY|1|Pt|U|22
8UIY|1|Pt|C|23

Current chains

Chain Pt

P site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L11

Chain Lo

60S ribosomal protein L36a