HL_8UIY_096

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8UIY|1|S2|G|821, 8UIY|1|S2|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIY_096 not in the Motif Atlas

Homologous match to HL_8CRE_207

Geometric discrepancy: 0.1407

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UIY|1|S2|U|820
8UIY|1|S2|G|821
8UIY|1|S2|U|822
8UIY|1|S2|U|823
8UIY|1|S2|C|824
8UIY|1|S2|A|825
8UIY|1|S2|A|826
8UIY|1|S2|A|827
8UIY|1|S2|G|828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24