HL_8UIY_114

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGUCGGCCCACGGC

Length

14 nucleotides

Bulged bases

8UIY|1|S2|G|1760, 8UIY|1|S2|C|1762, 8UIY|1|S2|G|1763, 8UIY|1|S2|G|1764, 8UIY|1|S2|C|1765, 8UIY|1|S2|C|1766, 8UIY|1|S2|C|1767, 8UIY|1|S2|A|1768, 8UIY|1|S2|C|1769, 8UIY|1|S2|G|1770

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIY|1|S2|G|1759
8UIY|1|S2|G|1760
8UIY|1|S2|U|1761
8UIY|1|S2|C|1762
8UIY|1|S2|G|1763
8UIY|1|S2|G|1764
8UIY|1|S2|C|1765
8UIY|1|S2|C|1766
8UIY|1|S2|C|1767
8UIY|1|S2|A|1768
8UIY|1|S2|C|1769
8UIY|1|S2|G|1770
8UIY|1|S2|G|1771
8UIY|1|S2|C|1772

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24