3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
CAGAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UIZ_059 not in the Motif Atlas
Homologous match to HL_8CRE_056
Geometric discrepancy: 0.0793
The information below is about HL_8CRE_056
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
24

Unit IDs

8UIZ|1|L5|C|4270
8UIZ|1|L5|A|4271
8UIZ|1|L5|G|4272
8UIZ|1|L5|A|4273
8UIZ|1|L5|A|4274
8UIZ|1|L5|G|4275
8UIZ|1|L5|G|4276
8UIZ|1|L5|G|4277

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LI
Ribosomal protein uL16-like
Chain LT
60S ribosomal protein L21
Chain Lo
60S ribosomal protein L36a
Chain Pt
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2164 s