3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
UGAGGA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UIZ_068 not in the Motif Atlas
Homologous match to HL_8CRE_065
Geometric discrepancy: 0.1481
The information below is about HL_8CRE_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_65794.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
14

Unit IDs

8UIZ|1|L5|U|4646
8UIZ|1|L5|G|4647
8UIZ|1|L5|A|4648
8UIZ|1|L5|G|4649
8UIZ|1|L5|G|4650
8UIZ|1|L5|A|4651

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19
Chain LU
Heparin-binding protein HBp15
Chain Ld
60S ribosomal protein L31

Coloring options:


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