HL_8UIZ_112

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIZ_112 not in the Motif Atlas

Homologous match to HL_8CRE_222

Geometric discrepancy: 0.2374

The information below is about HL_8CRE_222

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8UIZ|1|S2|C|1565
8UIZ|1|S2|G|1566
8UIZ|1|S2|G|1567
8UIZ|1|S2|C|1568
8UIZ|1|S2|A|1569
8UIZ|1|S2|G|1570

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19