3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
UCUUGAAACA
Length
10 nucleotides
Bulged bases
8UJ9|1|L5|C|1325
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJ9_014 not in the Motif Atlas
Homologous match to HL_8CRE_013
Geometric discrepancy: 0.0983
The information below is about HL_8CRE_013
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8UJ9|1|L5|U|1317
8UJ9|1|L5|C|1318
8UJ9|1|L5|U|1319
8UJ9|1|L5|U|1320
8UJ9|1|L5|G|1321
8UJ9|1|L5|A|1322
8UJ9|1|L5|A|1323
8UJ9|1|L5|A|1324
8UJ9|1|L5|C|1325
8UJ9|1|L5|A|1326

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain La
60S ribosomal protein L27a
Chain Le
60S ribosomal protein L32

Coloring options:


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