HL_8UJ9_024

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

8UJ9|1|L5|C|1763, 8UJ9|1|L5|A|1765, 8UJ9|1|L5|A|1766, 8UJ9|1|L5|A|1767, 8UJ9|1|L5|G|1769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJ9|1|L5|G|1759
8UJ9|1|L5|G|1760
8UJ9|1|L5|G|1761
8UJ9|1|L5|C|1762
8UJ9|1|L5|C|1763
8UJ9|1|L5|G|1764
8UJ9|1|L5|A|1765
8UJ9|1|L5|A|1766
8UJ9|1|L5|A|1767
8UJ9|1|L5|C|1768
8UJ9|1|L5|G|1769
8UJ9|1|L5|A|1770
8UJ9|1|L5|U|1771
8UJ9|1|L5|C|1772
8UJ9|1|L5|U|1773

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18