3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
UGUAACAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJ9_029 not in the Motif Atlas
Homologous match to HL_8CRE_027
Geometric discrepancy: 0.1884
The information below is about HL_8CRE_027
Detailed Annotation
GNRA wlth tandem sheared
Broad Annotation
No text annotation
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8UJ9|1|L5|U|2006
8UJ9|1|L5|G|2007
8UJ9|1|L5|U|2008
8UJ9|1|L5|A|2009
8UJ9|1|L5|A|2010
8UJ9|1|L5|C|2011
8UJ9|1|L5|A|2012
8UJ9|1|L5|A|2013

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain Lm
Large ribosomal subunit protein eL40
Chain Ls
60S acidic ribosomal protein P0
Chain Lt
Large ribosomal subunit protein uL11

Coloring options:


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