3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
ACGAGAACU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJ9_031 not in the Motif Atlas
Homologous match to HL_8CRE_030
Geometric discrepancy: 0.1413
The information below is about HL_8CRE_030
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8UJ9|1|L5|A|2376
8UJ9|1|L5|C|2377
8UJ9|1|L5|G|2378
8UJ9|1|L5|A|2379
8UJ9|1|L5|G|2380
8UJ9|1|L5|A|2381
8UJ9|1|L5|A|2382
8UJ9|1|L5|C|2383
8UJ9|1|L5|U|2384

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LP
60S ribosomal protein L17
Chain LR
60S ribosomal protein L19
Chain Ld
60S ribosomal protein L31

Coloring options:


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