HL_8UJ9_035

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8UJ9|1|L5|U|2530, 8UJ9|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_035 not in the Motif Atlas

Homologous match to HL_8P9A_146

Geometric discrepancy: 0.119

The information below is about HL_8P9A_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UJ9|1|L5|G|2523
8UJ9|1|L5|U|2524
8UJ9|1|L5|U|2525
8UJ9|1|L5|C|2526
8UJ9|1|L5|A|2527
8UJ9|1|L5|G|2528
8UJ9|1|L5|A|2529
8UJ9|1|L5|U|2530
8UJ9|1|L5|C|2531
8UJ9|1|L5|C|2532

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34