HL_8UJ9_042

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8UJ9|1|L5|C|2794, 8UJ9|1|L5|G|2796, 8UJ9|1|L5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_042 not in the Motif Atlas

Homologous match to HL_8CRE_040

Geometric discrepancy: 0.0864

The information below is about HL_8CRE_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8UJ9|1|L5|C|2792
8UJ9|1|L5|G|2793
8UJ9|1|L5|C|2794
8UJ9|1|L5|A|2795
8UJ9|1|L5|G|2796
8UJ9|1|L5|C|2797
8UJ9|1|L5|A|2798
8UJ9|1|L5|G|2799

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39