HL_8UJ9_043

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8UJ9|1|L5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_043 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.1442

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8UJ9|1|L5|U|2810
8UJ9|1|L5|G|2811
8UJ9|1|L5|A|2812
8UJ9|1|L5|A|2813
8UJ9|1|L5|C|2814
8UJ9|1|L5|A|2815
8UJ9|1|L5|G|2816

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19