3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CGCGGCG
Length
7 nucleotides
Bulged bases
8UJ9|1|L5|C|3673
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJ9_047 not in the Motif Atlas
Geometric match to HL_6CZR_103
Geometric discrepancy: 0.25
The information below is about HL_6CZR_103
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.6
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8UJ9|1|L5|C|3668
8UJ9|1|L5|G|3669
8UJ9|1|L5|C|3670
8UJ9|1|L5|G|3671
8UJ9|1|L5|G|3672
8UJ9|1|L5|C|3673
8UJ9|1|L5|G|3674

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LN
60S ribosomal protein L15

Coloring options:


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