HL_8UJ9_062

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8UJ9|1|L5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_062 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.2863

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UJ9|1|L5|C|4417
8UJ9|1|L5|G|4418
8UJ9|1|L5|U|4419
8UJ9|1|L5|U|4420
8UJ9|1|L5|C|4421
8UJ9|1|L5|A|4422
8UJ9|1|L5|U|4423
8UJ9|1|L5|A|4424
8UJ9|1|L5|G|4425

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lm

Large ribosomal subunit protein eL40