HL_8UJ9_064

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UJ9_064 not in the Motif Atlas

Homologous match to HL_8CRE_062

Geometric discrepancy: 0.1069

The information below is about HL_8CRE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8UJ9|1|L5|U|4497
8UJ9|1|L5|U|4498
8UJ9|1|L5|G|4499
8UJ9|1|L5|U|4500
8UJ9|1|L5|U|4501
8UJ9|1|L5|C|4502
8UJ9|1|L5|A|4503

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3