3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
8UJ9|1|L5|G|4694, 8UJ9|1|L5|C|4698
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJ9_068 not in the Motif Atlas
Homologous match to HL_8CRE_066
Geometric discrepancy: 0.0845
The information below is about HL_8CRE_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

8UJ9|1|L5|C|4688
8UJ9|1|L5|U|4689
8UJ9|1|L5|G|4690
8UJ9|1|L5|A|4691
8UJ9|1|L5|A|4692
8UJ9|1|L5|C|4693
8UJ9|1|L5|G|4694
8UJ9|1|L5|C|4695
8UJ9|1|L5|C|4696
8UJ9|1|L5|U|4697
8UJ9|1|L5|C|4698
8UJ9|1|L5|U|4699
8UJ9|1|L5|A|4700
8UJ9|1|L5|A|4701
8UJ9|1|L5|G|4702

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LH
60S ribosomal protein L9
Chain LO
60S ribosomal protein L13a
Chain Lm
Large ribosomal subunit protein eL40

Coloring options:


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