3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
GUAAUUC
Length
7 nucleotides
Bulged bases
8UJ9|1|S2|U|161
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UJ9_084 not in the Motif Atlas
Homologous match to HL_8CRE_193
Geometric discrepancy: 0.1807
The information below is about HL_8CRE_193
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

8UJ9|1|S2|G|156
8UJ9|1|S2|U|157
8UJ9|1|S2|A|158
8UJ9|1|S2|A|159
8UJ9|1|S2|U|160
8UJ9|1|S2|U|161
8UJ9|1|S2|C|162

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SG
40S ribosomal protein S6
Chain SY
40S ribosomal protein S24

Coloring options:


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